#!/bin/bash
# -*- coding: utf-8 -*-
# Test file for: compile_supplementary.sh
THIS_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
ROOT_DIR="$(realpath "$THIS_DIR/../..")"
# Test counter
TESTS_RUN=0
TESTS_PASSED=0
TESTS_FAILED=0
# Colors
GREEN='\033[0;32m'
RED='\033[0;31m'
NC='\033[0m'
assert_success() {
local cmd="$1"
local desc="${2:-$cmd}"
((TESTS_RUN++))
if eval "$cmd" > /dev/null 2>&1; then
echo -e "${GREEN}✓${NC} $desc"
((TESTS_PASSED++))
else
echo -e "${RED}✗${NC} $desc"
((TESTS_FAILED++))
fi
}
assert_file_exists() {
local file="$1"
((TESTS_RUN++))
if [ -f "$file" ]; then
echo -e "${GREEN}✓${NC} File exists: $file"
((TESTS_PASSED++))
else
echo -e "${RED}✗${NC} File missing: $file"
((TESTS_FAILED++))
fi
}
# Add your tests here
test_placeholder() {
echo "TODO: Add tests for compile_supplementary.sh"
}
# Run tests
main() {
echo "Testing: compile_supplementary.sh"
echo "========================================"
test_placeholder
echo "========================================"
echo "Results: $TESTS_PASSED/$TESTS_RUN passed"
[ $TESTS_FAILED -gt 0 ] && exit 1
exit 0
}
main "$@"
# --------------------------------------------------------------------------------
# Start of Source Code from: /home/ywatanabe/proj/scitex-writer/scripts/shell/compile_supplementary.sh
# --------------------------------------------------------------------------------
# #!/bin/bash
# # -*- coding: utf-8 -*-
# # Timestamp: "2025-09-27 15:20:00 (ywatanabe)"
# # File: ./paper/scripts/shell/compile_supplementary.sh
#
# # shellcheck disable=SC1091 # Don't follow sourced files
#
# export ORIG_DIR
# ORIG_DIR="$(pwd)"
# THIS_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
# LOG_PATH="$THIS_DIR/.$(basename "$0").log"
#
# # Resolve project root - critical for working directory independence (Issue #13)
# GIT_ROOT="$(git rev-parse --show-toplevel 2>/dev/null)"
# if [ -z "$GIT_ROOT" ]; then
# GIT_ROOT="$(cd "$THIS_DIR/../.." && pwd)"
# fi
# export PROJECT_ROOT="$GIT_ROOT"
#
# # Change to project root to ensure relative paths work
# cd "$PROJECT_ROOT" || exit 1
#
# GRAY='\033[0;90m'
# GREEN='\033[0;32m'
# YELLOW='\033[0;33m'
# RED='\033[0;31m'
# NC='\033[0m' # No Color
#
# echo_info() { echo -e "${GRAY}INFO: $1${NC}"; }
# echo_success() { echo -e "${GREEN}SUCC: $1${NC}"; }
# echo_warning() { echo -e "${YELLOW}WARN: $1${NC}"; }
# echo_error() { echo -e "${RED}ERRO: $1${NC}"; }
# echo_header() { echo_info "=== $1 ==="; }
# # ---------------------------------------
#
# # Timestamp tracking functions
# STAGE_START_TIME=0
# COMPILATION_START_TIME=$(date +%s)
#
# log_stage_start() {
# local stage_name="$1"
# STAGE_START_TIME=$(date +%s)
# local timestamp=$(date '+%H:%M:%S')
# echo_info "[$timestamp] Starting: $stage_name"
# }
#
# log_stage_end() {
# local stage_name="$1"
# local end_time=$(date +%s)
# local elapsed=$((end_time - STAGE_START_TIME))
# local total_elapsed=$((end_time - COMPILATION_START_TIME))
# local timestamp=$(date '+%H:%M:%S')
# echo_success "[$timestamp] Completed: $stage_name (${elapsed}s elapsed, ${total_elapsed}s total)"
# }
#
# # Configurations
# export SCITEX_WRITER_DOC_TYPE="supplementary"
# source ./config/load_config.sh "$SCITEX_WRITER_DOC_TYPE"
# echo
#
# # Log
# touch $LOG_PATH >/dev/null 2>&1
# mkdir -p "$LOG_DIR" && touch "$SCITEX_WRITER_GLOBAL_LOG_FILE"
#
# # Shell options
# set -e
# set -o pipefail
#
# # Default values for arguments
# do_p2t=false
# no_figs=false
# no_tables=false
# do_verbose=false
# do_crop_tif=false
# do_force=false
# no_diff=false
# draft_mode=false
# dark_mode=false
#
# usage() {
# echo "Usage: $0 [options]"
# echo "Options:"
# echo " -nf, --no_figs Exclude figures for quick compilation (default: false)"
# echo " -nt, --no_tables Exclude tables for quick compilation (default: false)"
# echo " -nd, --no_diff Skip diff generation (saves ~10s) (default: false)"
# echo " -d, --draft Draft mode: single-pass compilation (saves ~5s) (default: false)"
# echo " -dm, --dark_mode Dark mode: black background, white text (default: false)"
# echo " -p2t, --ppt2tif Converts Power Point to TIF on WSL (default: $do_p2t)"
# echo " -c, --crop_tif Crop TIF images to remove excess whitespace (default: $do_crop_tif)"
# echo " -q, --quiet Do not shows detailed logs for latex compilation (default: $do_verbose)"
# echo " --force Force full recompilation (ignore cache) (default: $do_force)"
# echo " -h, --help Display this help message"
# echo ""
# echo "Note: All options accept both hyphens and underscores (e.g., --no-figs or --no_figs)"
# exit 0
# }
#
# parse_arguments() {
# while [[ "$#" -gt 0 ]]; do
# # Normalize option: replace underscores with hyphens for matching
# local normalized_opt=$(echo "$1" | tr '_' '-')
#
# case $normalized_opt in
# -h | --help) usage ;;
# -p2t | --ppt2tif) do_p2t=true ;;
# -nf | --no-figs) no_figs=true ;;
# -nt | --no-tables) no_tables=true ;;
# -nd | --no-diff) no_diff=true ;;
# -d | --draft) draft_mode=true ;;
# -dm | --dark-mode) dark_mode=true ;;
# -c | --crop-tif) do_crop_tif=true ;;
# -v | --verbose) do_verbose=true ;;
# -q | --quiet) do_verbose=false ;;
# --force) do_force=true ;;
# *)
# echo "Unknown option: $1"
# usage
# ;;
# esac
# shift
# done
# }
#
# main() {
# parse_arguments "$@"
#
# # Log command options
# options_display=""
# $do_p2t && options_display="${options_display} --ppt2tif"
# $no_figs && options_display="${options_display} --no_figs"
# $no_tables && options_display="${options_display} --no_tables"
# $no_diff && options_display="${options_display} --no_diff"
# $draft_mode && options_display="${options_display} --draft"
# $dark_mode && options_display="${options_display} --dark_mode"
# $do_crop_tif && options_display="${options_display} --crop_tif"
# $do_verbose && options_display="${options_display} --verbose"
# echo_info "Running $0${options_display}..."
#
# # Verbosity
# export SCITEX_WRITER_VERBOSE_PDFLATEX=$do_verbose
# export SCITEX_WRITER_VERBOSE_BIBTEX=$do_verbose
#
# # Draft mode (single-pass compilation)
# export SCITEX_WRITER_DRAFT_MODE=$draft_mode
#
# # Dark mode (black background, white text)
# export SCITEX_WRITER_DARK_MODE=$dark_mode
#
# # Check dependencies
# log_stage_start "Dependency Check"
# ./scripts/shell/modules/check_dependancy_commands.sh
# log_stage_end "Dependency Check"
#
# # Merge bibliography files if multiple exist
# log_stage_start "Bibliography Merge"
# ./scripts/shell/modules/merge_bibliographies.sh
# log_stage_end "Bibliography Merge"
#
# # Apply citation style from config
# log_stage_start "Citation Style"
# ./scripts/shell/modules/apply_citation_style.sh
# log_stage_end "Citation Style"
#
# # Run independent processing in parallel for speed
# local parallel_start=$(date +%s)
# local timestamp=$(date '+%H:%M:%S')
# echo_info "[$timestamp] Starting: Parallel Processing (Figures, Tables, Word Count)"
#
# # Create temp files for parallel job outputs
# local temp_dir=$(mktemp -d)
# local fig_log="$temp_dir/figures.log"
# local tbl_log="$temp_dir/tables.log"
# local wrd_log="$temp_dir/words.log"
#
# # Run all three in parallel
# (
# ./scripts/shell/modules/process_figures.sh "$no_figs" "$do_p2t" "$do_verbose" "$do_crop_tif" >"$fig_log" 2>&1
# echo $? >"$temp_dir/fig_exit"
# ) &
# local fig_pid=$!
#
# (
# ./scripts/shell/modules/process_tables.sh "$no_tables" >"$tbl_log" 2>&1
# echo $? >"$temp_dir/tbl_exit"
# ) &
# local tbl_pid=$!
#
# (
# ./scripts/shell/modules/count_words.sh >"$wrd_log" 2>&1
# echo $? >"$temp_dir/wrd_exit"
# ) &
# local wrd_pid=$!
#
# # Wait for all parallel jobs
# wait $fig_pid $tbl_pid $wrd_pid
#
# # Display outputs in order
# echo_info " Figure Processing:"
# cat "$fig_log" | sed 's/^/ /'
#
# echo_info " Table Processing:"
# cat "$tbl_log" | sed 's/^/ /'
#
# echo_info " Word Count:"
# cat "$wrd_log" | sed 's/^/ /'
#
# # Check exit codes
# local fig_exit=$(cat "$temp_dir/fig_exit")
# local tbl_exit=$(cat "$temp_dir/tbl_exit")
# local wrd_exit=$(cat "$temp_dir/wrd_exit")
#
# rm -rf "$temp_dir"
#
# # Fail if any job failed
# if [ "$fig_exit" -ne 0 ] || [ "$tbl_exit" -ne 0 ] || [ "$wrd_exit" -ne 0 ]; then
# echo_error "Parallel processing failed (fig=$fig_exit, tbl=$tbl_exit, wrd=$wrd_exit)"
# exit 1
# fi
#
# local parallel_end=$(date +%s)
# local parallel_elapsed=$((parallel_end - parallel_start))
# local total_elapsed=$((parallel_end - COMPILATION_START_TIME))
# timestamp=$(date '+%H:%M:%S')
# echo_success "[$timestamp] Completed: Parallel Processing (${parallel_elapsed}s elapsed, ${total_elapsed}s total)"
#
# # Compile documents
# log_stage_start "TeX Compilation (Structure)"
# ./scripts/shell/modules/compilation_structure_tex_to_compiled_tex.sh
# log_stage_end "TeX Compilation (Structure)"
#
# # TeX to PDF
# log_stage_start "PDF Generation"
# ./scripts/shell/modules/compilation_compiled_tex_to_compiled_pdf.sh
# log_stage_end "PDF Generation"
#
# # Diff (skip if --no_diff specified)
# if [ "$no_diff" = false ]; then
# log_stage_start "Diff Generation"
# ./scripts/shell/modules/process_diff.sh
# log_stage_end "Diff Generation"
# else
# echo_info "Skipping diff generation (--no_diff specified)"
# fi
#
# # Versioning
# log_stage_start "Archive/Versioning"
# ./scripts/shell/modules/process_archive.sh
# log_stage_end "Archive/Versioning"
#
# # Cleanup
# log_stage_start "Cleanup"
# ./scripts/shell/modules/cleanup.sh
# log_stage_end "Cleanup"
#
# # Final steps
# log_stage_start "Directory Tree"
# ./scripts/shell/modules/custom_tree.sh
# log_stage_end "Directory Tree"
#
# # Logging
# echo
#
# local final_time=$(date +%s)
# local total_compilation_time=$((final_time - COMPILATION_START_TIME))
# echo_success "===================================================="
# echo_success "TOTAL COMPILATION TIME: ${total_compilation_time}s"
# echo_success "===================================================="
# echo_success "See $SCITEX_WRITER_GLOBAL_LOG_FILE"
# }
#
# main "$@" 2>&1 | tee -a "$LOG_PATH" "$SCITEX_WRITER_GLOBAL_LOG_FILE"
#
# # EOF
# --------------------------------------------------------------------------------
# End of Source Code from: /home/ywatanabe/proj/scitex-writer/scripts/shell/compile_supplementary.sh
# --------------------------------------------------------------------------------
/