#!/bin/bash
# -*- coding: utf-8 -*-
# Test file for: compile_revision.sh
THIS_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
ROOT_DIR="$(realpath "$THIS_DIR/../..")"
# Test counter
TESTS_RUN=0
TESTS_PASSED=0
TESTS_FAILED=0
# Colors
GREEN='\033[0;32m'
RED='\033[0;31m'
NC='\033[0m'
assert_success() {
local cmd="$1"
local desc="${2:-$cmd}"
((TESTS_RUN++))
if eval "$cmd" > /dev/null 2>&1; then
echo -e "${GREEN}✓${NC} $desc"
((TESTS_PASSED++))
else
echo -e "${RED}✗${NC} $desc"
((TESTS_FAILED++))
fi
}
assert_file_exists() {
local file="$1"
((TESTS_RUN++))
if [ -f "$file" ]; then
echo -e "${GREEN}✓${NC} File exists: $file"
((TESTS_PASSED++))
else
echo -e "${RED}✗${NC} File missing: $file"
((TESTS_FAILED++))
fi
}
# Add your tests here
test_placeholder() {
echo "TODO: Add tests for compile_revision.sh"
}
# Run tests
main() {
echo "Testing: compile_revision.sh"
echo "========================================"
test_placeholder
echo "========================================"
echo "Results: $TESTS_PASSED/$TESTS_RUN passed"
[ $TESTS_FAILED -gt 0 ] && exit 1
exit 0
}
main "$@"
# --------------------------------------------------------------------------------
# Start of Source Code from: /home/ywatanabe/proj/scitex-writer/scripts/shell/compile_revision.sh
# --------------------------------------------------------------------------------
# #!/bin/bash
# # -*- coding: utf-8 -*-
# # Timestamp: "2025-09-27 15:10:53 (ywatanabe)"
# # File: ./paper/scripts/shell/compile_revision
#
# # shellcheck disable=SC1091 # Don't follow sourced files
#
# export ORIG_DIR
# ORIG_DIR="$(pwd)"
# THIS_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
# LOG_PATH="$THIS_DIR/.$(basename "$0").log"
#
# # Resolve project root - critical for working directory independence (Issue #13)
# GIT_ROOT="$(git rev-parse --show-toplevel 2>/dev/null)"
# if [ -z "$GIT_ROOT" ]; then
# GIT_ROOT="$(cd "$THIS_DIR/../.." && pwd)"
# fi
# export PROJECT_ROOT="$GIT_ROOT"
#
# # Change to project root to ensure relative paths work
# cd "$PROJECT_ROOT" || exit 1
#
# GRAY='\033[0;90m'
# GREEN='\033[0;32m'
# YELLOW='\033[0;33m'
# RED='\033[0;31m'
# NC='\033[0m' # No Color
#
# echo_info() { echo -e "${GRAY}INFO: $1${NC}"; }
# echo_success() { echo -e "${GREEN}SUCC: $1${NC}"; }
# echo_warning() { echo -e "${YELLOW}WARN: $1${NC}"; }
# echo_error() { echo -e "${RED}ERRO: $1${NC}"; }
# echo_header() { echo_info "=== $1 ==="; }
# # ---------------------------------------
#
# # Timestamp tracking functions
# STAGE_START_TIME=0
# COMPILATION_START_TIME=$(date +%s)
#
# log_stage_start() {
# local stage_name="$1"
# STAGE_START_TIME=$(date +%s)
# local timestamp=$(date '+%H:%M:%S')
# echo_info "[$timestamp] Starting: $stage_name"
# }
#
# log_stage_end() {
# local stage_name="$1"
# local end_time=$(date +%s)
# local elapsed=$((end_time - STAGE_START_TIME))
# local total_elapsed=$((end_time - COMPILATION_START_TIME))
# local timestamp=$(date '+%H:%M:%S')
# echo_success "[$timestamp] Completed: $stage_name (${elapsed}s elapsed, ${total_elapsed}s total)"
# }
#
# ################################################################################
# # Description: Compiles revision response document
# # Processes reviewer comments and author responses with diff highlighting
# ################################################################################
#
# # Configurations
# export SCITEX_WRITER_DOC_TYPE="revision"
# source ./config/load_config.sh "$SCITEX_WRITER_DOC_TYPE"
# echo
#
# # Log
# touch $LOG_PATH >/dev/null 2>&1
# mkdir -p "$LOG_DIR" && touch "$SCITEX_WRITER_GLOBAL_LOG_FILE"
#
# # Shell options
# set -e
# set -o pipefail
#
# # Default values for arguments
# no_figs=false
# no_tables=false
# do_verbose=false
# draft_mode=false
# dark_mode=false
#
# usage() {
# echo "Usage: $0 [options]"
# echo "Options:"
# echo " -nf, --no_figs Exclude figures for quick compilation (default: false)"
# echo " -nt, --no_tables Exclude tables for quick compilation (default: false)"
# echo " -d, --draft Draft mode: single-pass compilation (saves ~5s) (default: false)"
# echo " -dm, --dark_mode Dark mode: black background, white text (default: false)"
# echo " -q, --quiet Do not shows detailed logs for latex compilation (default: $do_verbose)"
# echo " -h, --help Display this help message"
# echo ""
# echo "Note: All options accept both hyphens and underscores (e.g., --no-figs or --no_figs)"
# echo "Note: Revision documents skip diff generation by default (changes shown inline)"
# exit 0
# }
#
# parse_arguments() {
# while [[ "$#" -gt 0 ]]; do
# # Normalize option: replace underscores with hyphens for matching
# local normalized_opt=$(echo "$1" | tr '_' '-')
#
# case $normalized_opt in
# -h | --help) usage ;;
# -nf | --no-figs) no_figs=true ;;
# -nt | --no-tables) no_tables=true ;;
# -d | --draft) draft_mode=true ;;
# -dm | --dark-mode) dark_mode=true ;;
# -v | --verbose) do_verbose=true ;;
# -q | --quiet) do_verbose=false ;;
# *)
# echo "Unknown option: $1"
# usage
# ;;
# esac
# shift
# done
# }
#
# {
# parse_arguments "$@"
#
# # Log command options
# options_display=""
# $no_figs && options_display="${options_display} --no_figs"
# $no_tables && options_display="${options_display} --no_tables"
# $draft_mode && options_display="${options_display} --draft"
# $dark_mode && options_display="${options_display} --dark_mode"
# $do_verbose && options_display="${options_display} --verbose"
# echo_info "Running $0${options_display}..."
#
# # Verbosity
# export SCITEX_WRITER_VERBOSE_PDFLATEX=$do_verbose
# export SCITEX_WRITER_VERBOSE_BIBTEX=$do_verbose
#
# # Draft mode (single-pass compilation)
# export SCITEX_WRITER_DRAFT_MODE=$draft_mode
#
# # Dark mode (black background, white text)
# export SCITEX_WRITER_DARK_MODE=$dark_mode
#
# # 1. Check dependencies
# log_stage_start "Dependency Check"
# ./scripts/shell/modules/check_dependancy_commands.sh
# if [ $? -ne 0 ]; then
# echo -e "${RED}ERRO: Dependency check failed${NC}"
# exit 1
# fi
# log_stage_end "Dependency Check"
#
# # 2. Merge bibliography files if multiple exist
# log_stage_start "Bibliography Merge"
# ./scripts/shell/modules/merge_bibliographies.sh
# log_stage_end "Bibliography Merge"
#
# # 3. Apply citation style from config
# log_stage_start "Citation Style"
# ./scripts/shell/modules/apply_citation_style.sh
# log_stage_end "Citation Style"
#
# # 3. Check revision structure
# log_stage_start "Revision Structure Check"
# echo_info "Checking revision response structure..."
#
# # Expected structure with simplified naming (allowing optional descriptive suffixes):
# # Editor: E_01_comments[_description].tex, E_01_response[_description].tex, ...
# # Reviewer1: R1_01_comments[_description].tex, R1_01_response[_description].tex, ...
# # Reviewer2: R2_01_comments[_description].tex, R2_01_response[_description].tex, ...
# # Examples:
# # E_01_comments_about-methodology.tex
# # R1_02_response_statistical-analysis.tex
#
# check_revision_files() {
# local dir="$1"
# local prefix="$2" # E, R1, or R2
# local name="$3" # editor, reviewer1, reviewer2 for display
#
# if [ ! -d "$dir" ]; then
# echo -e "${YELLOW}WARN: Directory $dir not found${NC}"
# return 1
# fi
#
# echo -e "${BLUE} Checking $name responses...${NC}"
#
# # Check for comment/response pairs with simplified naming (supporting descriptive suffixes)
# local found_files=0
# for comment_file in "$dir"/${prefix}_*_comments*.tex; do
# if [ -f "$comment_file" ]; then
# # Extract the base ID (e.g., E_01, R1_02)
# local base_id=$(echo "$(basename $comment_file)" | sed -E "s/(${prefix}_[0-9]+)_comments.*/\1/")
#
# # Look for corresponding response file (may have different description)
# local response_found=false
# for response_file in "$dir"/${base_id}_response*.tex; do
# if [ -f "$response_file" ]; then
# echo -e "${GREEN} ✓ $(basename $comment_file) & $(basename $response_file)${NC}"
# found_files=$((found_files + 1))
# response_found=true
# break
# fi
# done
#
# if [ "$response_found" = false ]; then
# echo -e "${YELLOW} ⚠ Missing response for: $(basename $comment_file)${NC}"
# fi
# fi
# done
#
# if [ $found_files -eq 0 ]; then
# echo -e "${YELLOW} No comment/response pairs found in $dir${NC}"
# else
# echo -e "${GREEN} Found $found_files comment/response pair(s)${NC}"
# fi
#
# return 0
# }
#
# # Check each reviewer directory with simplified prefixes
# check_revision_files "./03_revision/contents/editor" "E" "Editor"
# check_revision_files "./03_revision/contents/reviewer1" "R1" "Reviewer 1"
# check_revision_files "./03_revision/contents/reviewer2" "R2" "Reviewer 2"
# log_stage_end "Revision Structure Check"
#
# # Run independent processing in parallel for speed
# parallel_start=$(date +%s)
# timestamp=$(date '+%H:%M:%S')
# echo_info "[$timestamp] Starting: Parallel Processing (Figures, Tables)"
#
# # Create temp files for parallel job outputs
# temp_dir=$(mktemp -d)
# fig_log="$temp_dir/figures.log"
# tbl_log="$temp_dir/tables.log"
#
# # Run both in parallel
# (
# ./scripts/shell/modules/process_figures.sh "$no_figs" false false false >"$fig_log" 2>&1
# echo $? >"$temp_dir/fig_exit"
# ) &
# fig_pid=$!
#
# (
# ./scripts/shell/modules/process_tables.sh "$no_tables" >"$tbl_log" 2>&1
# echo $? >"$temp_dir/tbl_exit"
# ) &
# tbl_pid=$!
#
# # Wait for all parallel jobs
# wait $fig_pid $tbl_pid
#
# # Display outputs in order
# echo_info " Figure Processing:"
# cat "$fig_log" | sed 's/^/ /'
#
# echo_info " Table Processing:"
# cat "$tbl_log" | sed 's/^/ /'
#
# # Check exit codes
# fig_exit=$(cat "$temp_dir/fig_exit")
# tbl_exit=$(cat "$temp_dir/tbl_exit")
#
# rm -rf "$temp_dir"
#
# # Fail if any job failed
# if [ "$fig_exit" -ne 0 ] || [ "$tbl_exit" -ne 0 ]; then
# echo_error "Parallel processing failed (fig=$fig_exit, tbl=$tbl_exit)"
# exit 1
# fi
#
# parallel_end=$(date +%s)
# parallel_elapsed=$((parallel_end - parallel_start))
# total_elapsed=$((parallel_end - COMPILATION_START_TIME))
# timestamp=$(date '+%H:%M:%S')
# echo_success "[$timestamp] Completed: Parallel Processing (${parallel_elapsed}s elapsed, ${total_elapsed}s total)"
#
# # Compile structure
# log_stage_start "TeX Compilation (Structure)"
# ./scripts/shell/modules/compilation_structure_tex_to_compiled_tex.sh
# log_stage_end "TeX Compilation (Structure)"
#
# # Compile to PDF
# log_stage_start "PDF Generation"
# ./scripts/shell/modules/compilation_compiled_tex_to_compiled_pdf.sh
# log_stage_end "PDF Generation"
#
# # Skip diff generation for revision (revision document already shows changes inline)
# echo_info "Skipping diff generation (revision document shows changes inline)"
#
# # Archive
# log_stage_start "Archive/Versioning"
# ./scripts/shell/modules/process_archive.sh
# log_stage_end "Archive/Versioning"
#
# # Cleanup
# log_stage_start "Cleanup"
# ./scripts/shell/modules/cleanup.sh
# log_stage_end "Cleanup"
#
# # Final steps
# log_stage_start "Directory Tree"
# ./scripts/shell/modules/custom_tree.sh
# log_stage_end "Directory Tree"
#
# # Logging
# echo
#
# final_time=$(date +%s)
# total_compilation_time=$((final_time - COMPILATION_START_TIME))
# echo_success "===================================================="
# echo_success "TOTAL COMPILATION TIME: ${total_compilation_time}s"
# echo_success "===================================================="
# echo_success "PDF: $SCITEX_WRITER_COMPILED_PDF"
# } 2>&1 | tee -a "$LOG_PATH" "$SCITEX_WRITER_GLOBAL_LOG_FILE"
#
# # EOF
# --------------------------------------------------------------------------------
# End of Source Code from: /home/ywatanabe/proj/scitex-writer/scripts/shell/compile_revision.sh
# --------------------------------------------------------------------------------
/