% ============================================================================== %DIF LATEXDIFF DIFFERENCE FILE %DIF DEL /home/ywatanabe/.cache/tmp/tmp.vgRXhzLBLT.tex Wed Feb 18 21:02:10 2026 %DIF ADD ./01_manuscript/manuscript.tex Wed Feb 18 21:01:57 2026 %DIF 2c2 %DIF < % SciTeX Writer 2.6.3 (https://scitex.ai) %DIF ------- % SciTeX Writer 2.6.7 (https://scitex.ai) %DIF > %DIF ------- % LaTeX compilation engine: auto %DIF 4c4 %DIF < % Compiled: 2026-02-11 18:23:39 %DIF ------- % Compiled: 2026-02-18 21:01:57 %DIF > %DIF ------- % Source: 01_manuscript/base.tex % ============================================================================== %% -*- coding: utf-8 -*- %DIF 9-10c9 %DIF < %% Timestamp: "2025-09-27 22:21:42 (ywatanabe)" %DIF < %% File: "/ssh:sp:/home/ywatanabe/proj/neurovista/paper/01_manuscript/base.tex" %DIF ------- %% File: 01_manuscript/base.tex %DIF > %DIF ------- \UseRawInputEncoding %% ---------------------------------------- %% SETTINGS %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/latex_styles/columns.tex % ====================================================================== %% -*- coding: utf-8 -*- %% File: 00_shared/latex_styles/columns.tex %% --- Columns --- %% \documentclass[final,3p,times,twocolumn]{elsarticle} %% Use it for submission %% Use the options 1p,twocolumn; 3p; 3p,twocolumn; 5p; or 5p,twocolumn %% for a journal layout: %% \documentclass[final,1p,times]{elsarticle} %% \documentclass[final,1p,times,twocolumn]{elsarticle} %% \documentclass[final,3p,times]{elsarticle} %% \documentclass[final,3p,times,twocolumn]{elsarticle} %% \documentclass[final,5p,times]{elsarticle} %% \documentclass[final,5p,times,twocolumn]{elsarticle} \documentclass[preprint,review,12pt]{elsarticle} %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/latex_styles/packages.tex % ====================================================================== %% -*- coding: utf-8 -*- %% File: 00_shared/latex_styles/packages.tex %% -*- coding: utf-8 -*- %% Timestamp: "2025-09-27 16:01:16 (ywatanabe)" %% Language and encoding \usepackage[english]{babel} \usepackage[T1]{fontenc} \usepackage[utf8]{inputenc} %% Colors (load early to avoid option clashes with tikz, pgfplots, tcolorbox) % Include all common color options: table (for colortbl), svgnames (for tcolorbox) \usepackage[table,svgnames]{xcolor} %% Mathematics \usepackage{amsmath, amssymb, amsthm} \usepackage{siunitx} \sisetup{round-mode=figures,round-precision=3} %% Graphics and figures \usepackage{graphicx} \usepackage{tikz} \usepackage{pgfplots, pgfplotstable} \usetikzlibrary{positioning,shapes,arrows,fit,calc,graphs,graphs.standard} %% Tables \usepackage{booktabs, colortbl, longtable, supertabular, tabularx, xltabular} \usepackage{csvsimple, makecell} %% Table formatting \renewcommand\theadfont{\bfseries} \renewcommand\theadalign{c} \newcolumntype{C}[1]{>{\centering\arraybackslash}m{#1}} \renewcommand{\arraystretch}{1.5} \definecolor{lightgray}{gray}{0.95} %% Layout and geometry \usepackage[pass]{geometry} \usepackage{pdflscape, indentfirst, calc} \usepackage{titlesec} % For custom section formatting %% Captions and references \usepackage[margin=10pt,font=small,labelfont=bf,labelsep=endash]{caption} \usepackage[numbers]{natbib} % numbers: numeric citations [1], [2] \setcitestyle{sort=false} % Preserve citation order as written \usepackage{hyperref} %% Document features \usepackage{accsupp, lineno, bashful, lipsum} %% Visual enhancements \usepackage[most]{tcolorbox} %% External references \usepackage{xr-hyper} %% EOF %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/latex_styles/linker.tex % ====================================================================== %% -*- coding: utf-8 -*- %% File: 00_shared/latex_styles/linker.tex %% --- Linker for supplemtal material --- \usepackage{xr} \makeatletter \newcommand*{\addFileDependency}[1]{% argument=file name and extension \typeout{(#1)} \@addtofilelist{#1} \IfFileExists{#1}{}{\typeout{No file #1.}} } \makeatother \newcommand*{\link}[2][]{% \externaldocument[#1]{#2}% \addFileDependency{#2.tex}% \addFileDependency{#2.aux}% } %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/latex_styles/formatting.tex % ====================================================================== %% -*- coding: utf-8 -*- %% File: 00_shared/latex_styles/formatting.tex %% --- Journal name header (show journal name as-is, without "Preprint submitted to" prefix) --- \makeatletter \def\ps@pprintTitle{% \def\@oddhead{\reset@font\footnotesize\itshape\@journal\hfill}% \let\@evenhead\@oddhead \def\@oddfoot{\reset@font\hfil\thepage\hfil}% \let\@evenfoot\@oddfoot} \makeatother %% --- 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(Auto-generated) %% ============================================================================= %% Comparison: v513391d → v721a65c+ %% Generated: 2026-02-18 21:02:11 %% User: Yusuke Watanabe %% Document: manuscript %% Git commit: 721a65c %% Git branch: develop %% ============================================================================= \usepackage{fancyhdr} \usepackage{lastpage} \fancypagestyle{diffstyle}{ \fancyhf{} \renewcommand{\headrulewidth}{0.4pt} \renewcommand{\footrulewidth}{0.4pt} \fancyhead[L]{\small\textit{Diff: v513391d → v721a65c+}} \fancyhead[R]{\small\textit{manuscript}} \fancyfoot[L]{\small Generated: 2026-02-18 21:02} \fancyfoot[C]{\small Page \thepage\ of \pageref{LastPage}} \fancyfoot[R]{\small Yusuke Watanabe} } \AtBeginDocument{\pagestyle{diffstyle}} % Hyperlink colors set via hypersetup (injected after \begin{document}) % Override hlref colorbox for dark mode (no yellow box on dark background) \renewcommand{\hlref}[1]{% \ifnum\getrefnumber{#1}=0 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PREAMBLE columns=fullflexible, %DIF PREAMBLE keepspaces=true %DIF PREAMBLE } %DIF PREAMBLE \lstnewenvironment{DIFverbatim}{\lstset{style=DIFverbatimstyle}}{} %DIF PREAMBLE \lstnewenvironment{DIFverbatim*}{\lstset{style=DIFverbatimstyle,showspaces=true}}{} %DIF PREAMBLE %DIF END PREAMBLE EXTENSION ADDED BY LATEXDIFF %% ============================================================================= %% Diff Document Metadata (Auto-generated) %% ============================================================================= %% Comparison: v513391d → v721a65c+ %% Generated: 2026-02-18 21:02:11 %% User: Yusuke Watanabe %% Document: manuscript %% Git commit: 721a65c %% Git branch: develop %% ============================================================================= \begin{document} %% ---------------------------------------- %% Frontmatter %% ---------------------------------------- \begin{frontmatter} % ====================================================================== % File: ./01_manuscript/contents/highlights.tex % ====================================================================== %% -*- coding: utf-8 -*- %% \begin{highlights} %% \pdfbookmark[1]{Highlights}{highlights} %% \item Highlight \#1 %% \item Highlight \#2 %% \item Highlight \#3 %% \end{highlights} %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/title.tex % ====================================================================== %% -*- coding: utf-8 -*- \title{ Your Manuscript Title Here } %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/authors.tex % ====================================================================== %% -*- coding: utf-8 -*- \author[1]{First Author\corref{cor1}} \author[2]{Second Author} \author[3]{Third Author} \address[1]{First Institution, Department, City, Country} \address[2]{Second Institution, Department, City, Country} \address[3]{Third Institution, Department, City, Country} \cortext[cor1]{Corresponding author. Email: your.email@institution.edu} %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/graphical_abstract.tex % ====================================================================== %%Graphical abstract %\pdfbookmark[1]{Graphical Abstract}{graphicalabstract} %\begin{graphicalabstract} %\includegraphics{grabs} %\end{graphicalabstract} % ====================================================================== % File: ./01_manuscript/contents/abstract.tex % ====================================================================== %% -*- coding: utf-8 -*- \begin{abstract} \pdfbookmark[1]{Abstract}{abstract} Replace this text with your manuscript abstract. Typically 150--250 words summarizing objectives, methods, key findings, and conclusions. \vspace{1em} \end{abstract} %%%% EOF % ====================================================================== % File: ./01_manuscript/contents/keywords.tex % ====================================================================== % \pdfbookmark[1]{Keywords}{keywords} \begin{keyword} keyword one \sep keyword two \sep keyword three \sep keyword four \sep keyword five \end{keyword} \end{frontmatter} %% ---------------------------------------- %% Word Counter %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/wordcount.tex % ====================================================================== %% -*- coding: utf-8 -*- %% File: 01_manuscript/contents/wordcount.tex \noindent\small \readwordcount{./01_manuscript/contents/wordcounts/figure_count.txt} figures, \readwordcount{./01_manuscript/contents/wordcounts/table_count.txt} tables, \readwordcount{./01_manuscript/contents/wordcounts/abstract_count.txt} words for abstract, and \readwordcount{./01_manuscript/contents/wordcounts/imrd_count.txt} words for main text (\readwordcount{./01_manuscript/contents/wordcounts/introduction_count.txt} for introduction, \readwordcount{./01_manuscript/contents/wordcounts/methods_count.txt} for methods, \readwordcount{./01_manuscript/contents/wordcounts/results_count.txt} for results, \readwordcount{./01_manuscript/contents/wordcounts/discussion_count.txt} for discussion) \normalsize %%%% EOF %% ---------------------------------------- %% INTRODUCTION %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/introduction.tex % ====================================================================== %% -*- coding: utf-8 -*- \section{Introduction} Replace this with your introduction. Establish context, review relevant work \cite{example_reference_2020}, identify gaps, and state your objectives. %%%% EOF %% ---------------------------------------- %% METHODS %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/methods.tex % ====================================================================== %% -*- coding: utf-8 -*- \section{Methods} Replace this with your methods. Describe study design, data collection, and analysis procedures \cite{example_method_2019}. Provide enough detail for reproducibility. %%%% EOF %% ---------------------------------------- %% RESULTS %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/results.tex % ====================================================================== %% -*- coding: utf-8 -*- \section{Results} Replace this with your results. Present findings with references to figures (Figure~\ref{fig:01_example_figure}) and tables (Table~\ref{tab:01_example_table}). %%%% EOF %% ---------------------------------------- %% DISCUSSION %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/discussion.tex % ====================================================================== %% -*- coding: utf-8 -*- \section{Discussion} Replace this with your discussion. Interpret findings, compare with previous work, discuss limitations, and state conclusions. %%%% EOF %% ---------------------------------------- %% REFERENCE STYLES %% ---------------------------------------- \pdfbookmark[1]{References}{references} % Note: Path without ./ prefix allows bibtex to use BIBINPUTS search path \bibliography{01_manuscript/contents/bibliography} % ====================================================================== % File: ./01_manuscript/contents/latex_styles/bibliography.tex % ====================================================================== %% -*- coding: utf-8 -*- %% File: 00_shared/latex_styles/bibliography.tex %% ============================================================================ %% BIBLIOGRAPHY STYLE CONFIGURATION %% ============================================================================ %% ---------------------------------------------------------------------------- %% OPTION 1: NUMBERED CITATIONS (Order of Appearance) - CURRENTLY ACTIVE %% ---------------------------------------------------------------------------- %% Description: Citations numbered [1], [2], [3]... in the order they first %% appear in the manuscript %% Sorting: By first citation order (NOT alphabetical) %% Example: \cite{Tort2010,Canolty2010} → [1, 2] (if these are first citations) %% Commands: \cite{key} → [1] %% \cite{key1,key2} → [1, 2] %% Best for: Most scientific journals, clear citation tracking %% Compatible with: natbib package \bibliographystyle{unsrtnat} %% ---------------------------------------------------------------------------- %% OPTION 2: NUMBERED CITATIONS (Alphabetical by Author) %% ---------------------------------------------------------------------------- %% Description: Citations numbered [1], [2], [3]... sorted alphabetically by %% first author's last name %% Sorting: Alphabetical by author (Canolty before Tort) %% Example: \cite{Tort2010,Canolty2010} → [2, 1] (C before T alphabetically) %% Commands: \cite{key} → [1] %% Best for: When you want bibliography sorted alphabetically %% Compatible with: elsarticle class % \bibliographystyle{elsarticle-num} %% Alternative alphabetical styles: % \bibliographystyle{plain} % Basic alphabetical, no natbib features % \bibliographystyle{ieeetr} % IEEE style, order of appearance % \bibliographystyle{siam} % SIAM style, alphabetical %% ---------------------------------------------------------------------------- %% OPTION 3: AUTHOR-YEAR CITATIONS %% ---------------------------------------------------------------------------- %% Description: Citations show author name and year (Smith, 2020) or (Smith 2020) %% Format: (Author, Year) or Author (Year) depending on command %% Example: \cite{Tort2010} → (Tort et al., 2010) %% \citet{Tort2010} → Tort et al. (2010) [textual] %% \cite{Tort2010} → (Tort et al., 2010) [parenthetical] %% Commands: %% - \citet{key} → Author (Year) [for text: "As shown by Author (2020)..."] %% - \cite{key} → (Author, Year) [for parentheses: "...as shown (Author, 2020)"] %% - \cite{key} → Same as \cite{key} %% Best for: Review papers, humanities, some social sciences %% Requires: natbib package (already loaded) % \bibliographystyle{plainnat} % Author-year, alphabetical % \bibliographystyle{abbrvnat} % Author-year, abbreviated names % \bibliographystyle{apalike} % APA-like author-year style %% ---------------------------------------------------------------------------- %% OPTION 4: JOURNAL-SPECIFIC STYLES %% ---------------------------------------------------------------------------- %% Elsevier journals: % \bibliographystyle{elsarticle-num} % Numbered, alphabetical % \bibliographystyle{elsarticle-num-names} % Numbered, alphabetical, full names % \bibliographystyle{elsarticle-harv} % Author-year (Harvard style) %% Nature family: % \bibliographystyle{naturemag} % Nature magazine style %% IEEE: % \bibliographystyle{IEEEtran} % IEEE Transactions style %% APA: % \bibliographystyle{apalike} % APA-like style %% ---------------------------------------------------------------------------- %% OPTION 5: ADDITIONAL CITATION STYLES %% ---------------------------------------------------------------------------- %% Note: Many of these styles require biblatex instead of natbib. %% To use biblatex, you need to modify the preamble and use biber instead of bibtex. %% Basic conversion: Replace natbib package with biblatex, and use \printbibliography %% instead of \bibliographystyle + \bibliography commands. %% ---------------------------------------- %% CHEMISTRY %% ---------------------------------------- %% American Chemical Society (ACS): %% Installation: Download achemso.bst or use biblatex with style=chem-acs %% Format: Numbered, order of appearance, (1) Author, A. B. Title. Journal Year, Volume, Pages. %% BibTeX method: % \bibliographystyle{achemso} % ACS style (requires achemso package) %% Biblatex method (recommended): % \usepackage[style=chem-acs]{biblatex} %% ---------------------------------------- %% MEDICAL & HEALTH SCIENCES %% ---------------------------------------- %% American Medical Association (AMA) 11th edition: %% Format: Numbered, order of appearance, superscript numbers %% Installation: Requires biblatex with biblatex-ama style %% Method: % \usepackage[style=ama]{biblatex} % AMA 11th ed (requires biblatex-ama package) %% Vancouver style (ICMJE): %% Format: Numbered [1], order of appearance, commonly used in medical journals %% Note: unsrtnat (currently active) is very similar to Vancouver % \bibliographystyle{vancouver} % Vancouver/ICMJE style (if .bst available) % \bibliographystyle{unsrtnat} % Similar to Vancouver (currently active) %% ---------------------------------------- %% SOCIAL SCIENCES %% ---------------------------------------- %% American Psychological Association (APA) 7th edition: %% Format: Author-year, (Author, Year), alphabetical by author %% BibTeX method (APA-like, not full APA 7th): % \bibliographystyle{apalike} % APA-like style (simplified) % \bibliographystyle{apacite} % APA 6th/7th (requires apacite package) %% Biblatex method (recommended for full APA 7th compliance): % \usepackage[style=apa]{biblatex} % Full APA 7th edition (requires biblatex-apa) %% American Sociological Association (ASA) 6th/7th edition: %% Format: Author-year, (Author Year), alphabetical, similar to Chicago author-date %% Method: % \bibliographystyle{asaetr} % ASA-like style (if .bst available) %% Biblatex method: % \usepackage[style=authoryear]{biblatex} % Generic author-year (customizable to ASA) %% American Political Science Association (APSA): %% Format: Author-year, similar to Chicago author-date %% Method: % \usepackage[style=authoryear-comp]{biblatex} % Compressed author-year for APSA %% ---------------------------------------- %% HUMANITIES %% ---------------------------------------- %% Chicago Manual of Style 18th edition (author-date): %% Format: Author-year, (Author Year), commonly used in social sciences and humanities % \bibliographystyle{chicago} % Chicago author-date (if .bst available) %% Biblatex method (recommended): % \usepackage[style=chicago-authordate]{biblatex} % Chicago 18th ed author-date %% Chicago Manual of Style 18th edition (notes and bibliography): %% Format: Footnote/endnote citations with full bibliography %% Method: % \usepackage[style=chicago-notes]{biblatex} % Chicago 18th ed notes style %% Chicago Manual of Style 18th edition (shortened notes and bibliography): %% Format: Shortened footnote citations after first full citation %% Method: % \usepackage[style=chicago-notes]{biblatex} % Use with ibidtracker option %% Modern Language Association (MLA) 9th edition: %% Format: Author-page, (Author Page), works cited list %% Method: % \usepackage[style=mla]{biblatex} % MLA 9th edition (requires biblatex-mla) %% Modern Humanities Research Association (MHRA) 4th edition: %% Format: Footnote citations with bibliography %% Method: % \usepackage[style=mhra]{biblatex} % MHRA 4th edition (requires biblatex-mhra) %% ---------------------------------------- %% HARVARD STYLES %% ---------------------------------------- %% Cite Them Right 12th edition - Harvard: %% Format: Author-year, (Author, Year), widely used in UK universities % \bibliographystyle{agsm} % Harvard style (Australian) % \bibliographystyle{dcu} % Harvard style (Dublin City University) %% Biblatex method: % \usepackage[style=authoryear]{biblatex} % Generic Harvard-style (author-year) %% Elsevier - Harvard (with titles): %% Format: Author-year with article titles included % \bibliographystyle{elsarticle-harv} % Elsevier Harvard style (already listed above) %% ---------------------------------------- %% ENGINEERING & COMPUTER SCIENCE %% ---------------------------------------- %% IEEE (Institute of Electrical and Electronics Engineers): %% Format: Numbered [1], order of appearance, widely used in engineering % \bibliographystyle{IEEEtran} % IEEE Transactions style (already listed above) %% ---------------------------------------- %% NATURAL SCIENCES %% ---------------------------------------- %% Nature: %% Format: Numbered, superscript, order of appearance % \bibliographystyle{naturemag} % Nature magazine style (already listed above) % \bibliographystyle{naturemag-doi} % Nature with DOIs %% ---------------------------------------------------------------------------- %% BIBLATEX SETUP INSTRUCTIONS %% ---------------------------------------------------------------------------- %% To switch from natbib to biblatex: %% %% 1. In packages.tex, replace: %% \usepackage[numbers]{natbib} %% with: %% \usepackage[style=STYLENAME,backend=biber]{biblatex} %% \addbibresource{path/to/bibliography.bib} %% %% 2. In this file (bibliography.tex), replace: %% \bibliographystyle{...} %% with: %% % No \bibliographystyle needed with biblatex %% %% 3. In your main .tex file, replace: %% \bibliography{path/to/bibliography} %% with: %% \printbibliography %% %% 4. Change compilation command: %% pdflatex → biber → pdflatex → pdflatex %% (instead of pdflatex → bibtex → pdflatex → pdflatex) %% %% Example biblatex styles: %% style=numeric-comp → Compressed numeric [1-3,5] %% style=authoryear → (Author, Year) %% style=authoryear-comp → (Author1, 2020; Author2, 2021) %% style=apa → APA 7th edition %% style=chicago-authordate → Chicago author-date %% style=ieee → IEEE style %% style=nature → Nature style %% style=mla → MLA 9th edition %% ---------------------------------------------------------------------------- %% CITATION COMMAND REFERENCE (with natbib) %% ---------------------------------------------------------------------------- %% Basic commands: %% \cite{key} → [1] or (Author, Year) depending on style %% \cite{key1,key2} → [1, 2] or (Author1, Year1; Author2, Year2) %% %% Advanced natbib commands (only work with natbib-compatible styles): %% \citet{key} → Author (Year) [textual citation] %% \cite{key} → (Author, Year) [parenthetical citation] %% \citet*{key} → Full author list (Year) %% \cite*{key} → (Full author list, Year) %% \citealt{key} → Author Year [no parentheses] %% \citealp{key} → Author, Year [no parentheses] %% \citeauthor{key} → Author [name only] %% \citeyear{key} → Year [year only] %% \citeyearpar{key} → (Year) [year in parentheses] %% %% Pre/post notes: %% \cite[see][p.~10]{key} → (see Author, Year, p. 10) %% \cite[p.~10]{key} → (Author, Year, p. 10) %% %% Multiple citations: %% \cite{key1,key2,key3} → (Author1, Year1; Author2, Year2; Author3, Year3) %% %% Suppressing parts: %% \cite[e.g.,][]{key} → (e.g., Author, Year) %% \cite[][see p.~10]{key}→ (Author, Year, see p. 10) %% %% ---------------------------------------------------------------------------- %% TROUBLESHOOTING %% ---------------------------------------------------------------------------- %% Problem: Citations appear as [?] or undefined %% Solution: Run compilation 3-4 times to resolve all references %% %% Problem: Citation numbers out of order [3, 1] instead of [1, 3] %% Solution: Use unsrtnat (order of appearance) instead of elsarticle-num %% %% Problem: "Undefined control sequence \citet" %% Solution: \citet only works with natbib-compatible styles (unsrtnat, plainnat) %% Use \cite{} with non-natbib styles %% %% Problem: Bibliography not appearing %% Solution: Ensure \bibliography{path/to/bibfile} command exists in main file %% Run: pdflatex → bibtex → pdflatex → pdflatex %%%% EOF %% ---------------------------------------- %% DATA AVAILABILITY %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/data_availability.tex % ====================================================================== %% -*- coding: utf-8 -*- \pdfbookmark[1]{Data Availability Statement}{data_availability} \section*{Data Availability Statement} The data and code that support the findings of this study are available from the corresponding author upon reasonable request. \label{data and code availability} %%%% EOF %% ---------------------------------------- %% ADDITIONAL INFORMATION %% ---------------------------------------- % ====================================================================== % File: ./01_manuscript/contents/additional_info.tex % ====================================================================== %% -*- coding: utf-8 -*- \pdfbookmark[1]{Additional Information}{additional_information} \pdfbookmark[2]{Ethics Declarations}{ethics_declarations} \section*{Ethics Declarations} Replace with your ethics statement. \label{ethics declarations} \pdfbookmark[2]{Contributors}{author_contributions} \section*{Author Contributions} Replace with author contributions. \label{author contributions} \pdfbookmark[2]{Acknowledgments}{acknowledgments} \section*{Acknowledgments} Replace with acknowledgments. \label{acknowledgments} \pdfbookmark[2]{Declaration of Interests}{declaration_of_interest} \section*{Declaration of Interests} The authors declare that they have no competing interests. \label{declaration of interests} \pdfbookmark[2]{Declaration of Generative AI in Scientific Writing}{declaration_of_generative_ai} \section*{Declaration of Generative AI in Scientific Writing} Disclose any use of generative AI tools here. \label{declaration of generative ai in scientific writing} %%%% EOF %% ---------------------------------------- %% TABLES %% ---------------------------------------- \clearpage \section*{Tables} \label{tables} \pdfbookmark[1]{Tables}{tables} \vspace{1cm} % ====================================================================== % File: ./01_manuscript/contents/tables/compiled/FINAL.tex % ====================================================================== % Auto-generated file containing all table inputs % Generated by gather_table_tex_files() % Table from: 01_example_table.tex % ====================================================================== % File: ./01_manuscript/contents/tables/compiled/01_example_table.tex % ====================================================================== \DIFdelbegin %DIFDELCMD < \pdfbookmark[2]{Table 1_example_table}{table_01_example_table} %DIFDELCMD < %%% \DIFdelend \DIFaddbegin \pdfbookmark[2]{Table 01 --- Replace with your table title}{table_01_example_table} \DIFaddend \begin{table}[htbp] \centering \footnotesize \begin{tabular}{|l|l|l|} \hline Category&Value&Description\\ \hline Example A&1.00&Replace with your data\\ \hline Example B&2.00&Replace with your data\\ \hline Example C&3.00&Replace with your data\\ \hline \end{tabular} %% Edit this file: 01_manuscript/contents/tables/caption_and_media/01_example_table.tex \caption{\textbf{Replace with your table title.}\\ \smallskip Replace with your table legend text. Edit this caption at \texttt{01\_manuscript/contents/tables/caption\_and\_media/01\_example\_table.tex}. } \label{tab:01_example_table} \end{table} %% ---------------------------------------- %% FIGURES %% ---------------------------------------- \clearpage \section*{Figures} \label{figures} \pdfbookmark[1]{Figures}{figures} \vspace{1cm} % ====================================================================== % File: ./01_manuscript/contents/figures/compiled/FINAL.tex % ====================================================================== % Generated by compile_figure_tex_files() % This file includes all figure files in order % Figure 01 \begin{figure*}[htbp] \DIFdelbeginFL %DIFDELCMD < \pdfbookmark[2]{Figure 01}{.01} %DIFDELCMD < %%% \DIFdelendFL \DIFaddbeginFL \pdfbookmark[2]{Figure 01 --- Replace with your figure title}{.01} \DIFaddendFL \centering \includegraphics[width=0.9\textwidth]{./01_manuscript/contents/figures/caption_and_media/jpg_for_compilation/01_example_figure.jpg} \caption{\textbf{Replace with your figure title.}\\ \smallskip Replace with your figure legend text. Edit this caption at \texttt{01\_manuscript/contents/figures/caption\_and\_media/01\_example\_figure.tex}. } \label{fig:01_example_figure} \end{figure*} % Figure 02 \begin{figure*}[htbp] \DIFdelbeginFL %DIFDELCMD < \pdfbookmark[2]{Figure 02}{.02} %DIFDELCMD < %%% \DIFdelendFL \DIFaddbeginFL \pdfbookmark[2]{Figure 02 --- Replace with your figure title}{.02} \DIFaddendFL \centering \includegraphics[width=0.9\textwidth]{./01_manuscript/contents/figures/caption_and_media/jpg_for_compilation/02_another_example.jpg} \caption{\textbf{Replace with your figure title.}\\ \smallskip Replace with your figure legend text. Edit this caption at \texttt{01\_manuscript/contents/figures/caption\_and\_media/02\_another\_example.tex}. } \label{fig:02_another_example} \end{figure*} %% ---------------------------------------- %% END of DOCUMENT %% ---------------------------------------- \end{document} %%%% EOF