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readonly-visitor
/
plaque
/
scitex
/
writer
/
src
/
scitex_writer
/
skills
/
references
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manuscript-workflow.md
name: manuscript-workflow
description: Complete manuscript workflow from project creation to submission.
Manuscript Workflow
1. Create Project
scitex template clone-template research-paper ./my-paper/
2. Write Sections
Edit LaTeX files in sections/: abstract, introduction, methods, results, discussion.
3. Add Figures
scitex-writer figures add ./my-paper/ fig.png --caption "Results" --label fig:results
4. Add Tables
scitex-writer tables add ./my-paper/ data.csv --caption "Summary" --label tab:summary
5. Manage Bibliography
scitex-writer bib add ./my-paper/ --doi 10.1038/s41586-024-00001-1
scitex-writer bib enrich ./my-paper/references.bib
6. Track Claims
Link claims to computational evidence for reproducibility.
7. Check Guidelines
scitex-writer guidelines get nature
8. Compile
scitex-writer compile manuscript ./my-paper/
scitex-writer compile supplementary ./my-paper/
scitex-writer compile revision ./my-paper/
9. Export
scitex-writer export overleaf ./my-paper/ -o overleaf/
scitex-writer export manuscript ./my-paper/ -o submission/
Directory Structure
my-paper/
├── main.tex
├── sections/{abstract,introduction,methods,results,discussion}.tex
├── figures/
├── tables/
├── references.bib
├── claims.yaml
└── project.yaml