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README.md

SciTeX Research Template

Like GitHub, but for scientific research. Version control your papers, data, and analysis - all in one place.

🚀 Quick Start

What you want to do Where to go
Write a paper scitex/writer/ → Open in Writer
Manage references scitex/scholar/ → Open in Scholar
Run analysis scripts/ → Open in Console
Create figures scitex/vis/ → Open in Visualizer

📁 Project Structure

your-project/
├── config/          # Settings (like .github/ but for research)
├── data/            # Your datasets (raw → processed)
├── docs/            # Documentation & notes
├── scripts/         # Analysis code (Python, R, etc.)
├── scitex/          # SciTeX-managed folders
│   ├── writer/      # Manuscripts (.tex files)
│   ├── scholar/     # References (.bib files)
│   └── vis/         # Figures (.pltz, .figz)
├── tests/           # Test your analysis code
├── Makefile         # Automation (like GitHub Actions)
└── README.md        # You are here

🔄 Typical Workflow

  1. Add data → Upload to data/raw/
  2. Write scripts → Create in scripts/ using Console
  3. Run analysis → Submit jobs via SLURM or run directly
  4. Generate figures → Auto-saved to scitex/vis/
  5. Write paper → Edit in Writer, cite from Scholar
  6. Compile PDF → One-click in Writer
  7. Commit & push → Version everything like GitHub

⌨️ Makefile Commands

make help           # Show all available commands
make run            # Run main analysis
make test           # Run test suite
make figures        # Generate all figures
make compile        # Compile manuscript to PDF
make clean          # Clean temporary files

📖 Learn More

This project is managed by SciTeX - Where Research Happens.